NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1006682

Scaffold Ga0208644_1006682


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1006682 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8334
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (26.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011666Metagenome288Y
F038240Metagenome / Metatranscriptome166Y
F056612Metagenome / Metatranscriptome137N
F059943Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0208644_10066822F011666N/AMEMHPIERTTESLFSEAATAKMLEEWLRNGDIHGIYNAALLLNTMLHQQRTITKWLAGEAARNIGRPELEDEIMQQAIDWAED
Ga0208644_10066826F059943N/AMNKIANFGELFPDWNEPNRGLGLSFCVASNARMFDYELLLPGERSMRGCIRAVDKKDAIRILNNRHPNCSIVEIGQGRRITPQSKKA
Ga0208644_10066828F056612N/AMSDFESAFDAKFTLFDVKEKKSDRAPDKTGLIEIELSEAMKLAEWLTAQPGEDGYGGTTVIKIPVSAWDAQAKSGTKYINGKVWAKKSEGVSIPNTIY
Ga0208644_10066829F038240N/AMAIPAGNKYKVQVLLDPKAYEAMQREIIQRYDTPHRVTESSLANEIIKSHYAILESQDE

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