Scaffold Ga0208644

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1004177 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10954
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (19.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F036007	Metagenome	171	Y
F056576	Metagenome / Metatranscriptome	137	N
F070187	Metagenome / Metatranscriptome	123	Y
F080000	Metagenome / Metatranscriptome	115	N

Family

Category

Number of Sequences

3D Structure?

Metagenome

171

Metagenome / Metatranscriptome

137

Metagenome / Metatranscriptome

123

Metagenome / Metatranscriptome

115

Protein ID	Family	RBS	Sequence
Ga0208644_100417712	F080000	N/A	MPKIVSLQDTGRMWKEFHILNIAFDNNDSGDVLAKSTSPSYKVGDEVQYTKNERGGIKIQREQSNYPSSNNSNYSPKVKQDNSEQIARSVVFKGAIDLVASGKLQVTDIPSFVDKYLSVVTGAQAQGASYANHFQESSPF
Ga0208644_100417715	F036007	N/A	MTLTHTLPSVVDISVEIGKVPSLNAFYASKHWAIRKKAKDKFKAEVLEQLDQYDKFEFKSVAVRLETNLGYDIDNCIMAVKFSMDALKEWGGVKDDTKVYFPKLTIIYNPELEKNTSKIFFTGDLVD
Ga0208644_100417723	F056576	N/A	MMTRTESVGATFLSTAISWVTIDINPILSGIASIFAIVLSCFLIYKTYLEIKIRKNQLK
Ga0208644_100417724	F070187	N/A	MATLRKYEYSPSQWATAKSKITLTNEEGETYYDPAKVRQVVELGNLVTTPAIYDEEGNELSPAVLSTKWSVDILWEGEPMTTAFESYEIWCAPMGVHSMGGVHTMLEWIETCKSKRPELFPEPSAE

Protein ID

Family

RBS

Sequence

Ga0208644_100417712

N/A

MPKIVSLQDTGRMWKEFHILNIAFDNNDSGDVLAKSTSPSYKVGDEVQYTKNERGGIKIQREQSNYPSSNNSNYSPKVKQDNSEQIARSVVFKGAIDLVASGKLQVTDIPSFVDKYLSVVTGAQAQGASYANHFQESSPF

Ga0208644_100417715

N/A

MTLTHTLPSVVDISVEIGKVPSLNAFYASKHWAIRKKAKDKFKAEVLEQLDQYDKFEFKSVAVRLETNLGYDIDNCIMAVKFSMDALKEWGGVKDDTKVYFPKLTIIYNPELEKNTSKIFFTGDLVD

Ga0208644_100417723

N/A

MMTRTESVGATFLSTAISWVTIDINPILSGIASIFAIVLSCFLIYKTYLEIKIRKNQLK

Ga0208644_100417724

N/A

MATLRKYEYSPSQWATAKSKITLTNEEGETYYDPAKVRQVVELGNLVTTPAIYDEEGNELSPAVLSTKWSVDILWEGEPMTTAFESYEIWCAPMGVHSMGGVHTMLEWIETCKSKRPELFPEPSAE

NMPFamsDB