Scaffold Ga0208644_1000076

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1000076
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59501
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F001235	Metagenome / Metatranscriptome	741	Y
F064801	Metagenome / Metatranscriptome	128	Y
F097509	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_10000765	F097509	N/A	MLKLEDISNEVYFAFRKAQIEAMKTERLGVIHVSDIIKPCMRNVIYKKTLPETGMNTEDMRSLYFGQAIHSASMVAKPEFHEMFLAYDYVRDEALTREESLKIPVDDPRHLDIIYGSIDDVMEINGKYIICDKKTTGSIAYFSKATSKPSESHVDQINRYRVLLKKCYDIDADYGCVIYISNAVDKETRDKPSCLPFKLAPIEETLEDMIVKSREIKDSLTNKTLPPRVKNYLCDGFCPYATMCFQDDREKWE
Ga0208644_100007662	F064801	N/A	MGFRDYLTNVSKAFINKSNTETTVRPSITTPYMSTDTGAKLPIFPFPLMMIYELADNIDALRIPIETINREMFKNGFEIVEKWKYKCENCGKEFQYAPTIDDKPDEQPFEQNQDNETNAIPKAKAIIDESQLQCDTCGNTNLRRPVPEHRLILENLITKPVNGNQQTLEDLARQLERDLEIADNAYLLVLKQYNINDRTGEINHDQSEIKEYLRIDPPQVAMICDSDGRLGYNDKHEPIFVCPYFEHRRTRLHKDTCEKTDDGVHSNPVKALKALIEVNAVYSIGTPQPKSVIYGEGEVVWKAGKYKPSLVYGFSPIYAVWSKAMTLSHMDEYVRKYFDKMRPPRGMLVIASRNYETFRKSWGELEMRAAEDPYMIHPLMVESDKGGKNMAQWIDFTGSLRELEFIEVRKELRQLIGAIYGVLPLYFGEMVGGWSQEGLQVTITNRAVKWGQDILSKAFFDKIAEMLNVDDWHLRLKGGEENDKLRELQTDGVEIQNMAILQQMGFDITRTHTGEFKVSKETALSASDMMMNDMQARMGRGRGTASPKENRQNMQGEPLQTRPSDMGGVSQGFPASGSGTTMSKKAYNDGITPDNFDVIKSLLQTAVNYDWNKGKMVDELRKQAGMTVRQARDLVKNELSMVKRWEDVDEEKS
Ga0208644_100007663	F001235	N/A	MAEKLNINHGGTDIGKKLLRKHQENEFTKVNNYKEAVCLNCLKNDRAIATIAMICGECAGKRGREALLATISHKFYGLCLFCGEHKFNLEEINARFCMTCHGRIAQITKEYNKKGGMYGADPFWQKMRRKYGKDWQIKFKEGWNTKGRD
Ga0208644_10000767	F001066	N/A	MVEDSEIFKIKSVNGNFVASEDKRKTISAYNSAKHFKDANLPAMCDQCVYRSIEDGGNGRCPKYEKGSVCTIRKDFVTLLNNLDTRNPEDVKDMLDLIAKLSMENVLMALTQAKFDGNIPDRNTKSEINTLLNVLKSINDLNSKIVVTEKTEFGKTGDISSIFRQIKAQKAVSNDTRENQERTD