Basic Information | |
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Taxon OID | 3300025886 Open in IMG/M |
Scaffold ID | Ga0209632_10012290 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6627 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (30.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F017994 | Metagenome | 237 | Y |
F036002 | Metagenome / Metatranscriptome | 171 | Y |
F037817 | Metagenome | 167 | Y |
F080032 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209632_1001229011 | F036002 | N/A | MWKNLKSKEKEIDIEILQERKNPFYVINEYAQVFAGLRQGYPYFSDNVTEAKPIYNNEQFGTIRRGHLYNIERVEPQDLL |
Ga0209632_1001229013 | F080032 | N/A | MKEKKEQKVKLKYDFPSQLCCEVYVPNLEDWFRVTPKEFRSWCGQRRMLHLEGSIKQNTSIKAEYRDYDGPTYLYDSNKKINPNKHTQNKVAFLHGKDPRESKQRRHNAY |
Ga0209632_1001229017 | F017994 | N/A | MEFNEFIMHKTRWLNGWNKHMKLGNINFKTYMLMRGMSEEEFDVLNIKSEQKHV |
Ga0209632_100122906 | F037817 | N/A | MFTQVLIPDSKKEMEYIVTAEINSVHPEIDLRPGPYYFIQEAKKGTGKKIQKANFKKGRFYNHEDVIVA |
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