Scaffold Ga0207653

Basic Information
Taxon OID	3300025885 Open in IMG/M
Scaffold ID	Ga0207653_10000258 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0207653_10000258 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33505
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (76.47%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

33505

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (76.47%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002381	Metagenome / Metatranscriptome	566	Y
F003580	Metagenome / Metatranscriptome	478	Y
F030725	Metagenome / Metatranscriptome	184	Y
F040038	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207653_1000025811	F003580	N/A	MAIFLYKAAVVLQLVQTPAARPDSAWTQLWARVAADSTSGPAWLELGRAYLQRAADYHAHKKPVPVDTALAHATLDTAQLAFERAARFSAGTRTADSARVYRVYAFGEWAYVDWEAAGTTAATLTWHALPEELRLPPVLEELGENLLRACPHQGMLFTAGETDTQAAWYLRFARGLRPDLMIVPIDRWRGDSVLRNRVLRELRTRDPSLRALSQSRAVCASMGFERPPDERALQWNKRPLVWVTGKETKADRVPAQDFVFAALKLAVDEHETWTPPVTALYKRAAANVGALCKAFETFGLSAEVGCR
Ga0207653_1000025821	F002381	GAGG	MRGLTLLTATILTFGYGFAAQAAMTVDRAETYRRVAGTVVTAAPVPVEDAKRVWYGGMLAPITVEVTAEPKCTVI
Ga0207653_1000025825	F040038	GAG	VRLVLVALLLPTMVAAQALELNGILTLAHGDHRVDAGFGVERAAGLLIGGATTLRHRGIALSISGEAGHLTAVQGTGGIDRDFSQAGAVVQFAPLPWLVLESGVTLRSYGTVVARQRWTLVRAGAEARVPLSGETFWAVGHAHLLPLVTVNGLPNAATAFDAGTGLAYRRGRLLFDLTYSLERCDFPSQGSTRRSEQFGQLALRGGVLLRVH
Ga0207653_1000025828	F030725	GGA	VSRPLVAGFAAGLLGGLVFGCALTDVFDPPGPAADIVFVFSDSILTVGDTVPLVVTVRSAAGDVANPRLRVTSLDPGLLQVNARGDTLMALNQGRALLDVQLVSSVITGVAPDTVHPIRVRP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207653_10000258

Overview

Ecosystem & Geography

Associated Families

Sequences