Scaffold Ga0207653_10000017

Overview

Basic Information

• Taxon OID: 3300025885
• Scaffold ID: Ga0207653_10000017
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142553
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (68.80%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001795	Metagenome / Metatranscriptome	633	Y
F001972	Metagenome / Metatranscriptome	609	Y
F037173	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207653_1000001743	F037173	AGGAG	MKDAQAFDHRPDPELGAALRAALEPKDDHAAFVARVMGQYERALEHGTIPTLDVLASWFRPGIAAAVAALIVGFLFGRGILTPAPTIDAAMAPSERPELAALVTAADPPDASVVFASLVEQH
Ga0207653_1000001753	F001795	N/A	MRAATFVAIAVLTACRSQNAAVPARNTDSLSFADVTPRDSADSSLLVPRVITGPTVVVFWLSGADTLSADDQAEALDELNYTTEGIAPTLTQHNIQLVPTNSDTIYVTLPNKQRRMILLTGVDYPFGYVLVAPGTAERILAGVYDDDELLDEVDAYFDLPSATDSTAKGPRIAT
Ga0207653_1000001776	F001972	GGAGG	VKALTRNTLLALPLALVVSAAIPGQGAIGWDFLDAFTVAFCFTYVGHLVEVLLLKIPGIETPAGKFIRLVGWFAGGLWCYELGRWLLILYGRNTAQLPSLIWGGVFFVVVELVVHAILRSSGKPNFYSGAG