Scaffold Ga0209534_10020715

Overview

Basic Information

• Taxon OID: 3300025880
• Scaffold ID: Ga0209534_10020715
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4812
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003835	Metagenome / Metatranscriptome	466	Y
F045652	Metagenome / Metatranscriptome	152	N
F061284	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209534_100207156	F045652	AGAAGG	MDQFNKLIRGRGGRRAQCKHCDRQYSEQRGLKVPQEPSEYKLTKQTMMNHMYIHFGWWESKMTTIERDQQRRDLRKYYKEEQQTNNK
Ga0209534_100207157	F003835	N/A	MKIDLKVRNTIAQLIVDMEIGESKPIRKHEMVPVIKEVNDTALISHAIRFVKNADGDVIAIKKYRKTAIEKRFETQK
Ga0209534_100207158	F061284	N/A	MNYEDYQRFEELAFDHLLKQYGWKIHTTPKYALIDGVATKNNEVTHIVEFKSRNESLESMERFGTYLISYDKILNGIEISRVMCVPFILIVYLIKDGVVIGIELGDEYGVAVPMEIKETRTQKSIDGGEAIRRNAYIDIEKFHIL