Scaffold Ga0209757_10024463

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10024463
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1692
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012984	Metagenome / Metatranscriptome	275	Y
F018017	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100244634	F018017	N/A	LKNDSLNADNTTTKIDSLWANQQKIIPIPPLSALKLHGDNCGGFRACHTCRGTRFVYIRSKWDNRITYKKCMACSGSGSIDTRTLN
Ga0209757_100244635	F012984	N/A	VAVSIQEPLTEIQKKQYLTELGLEPVLAYYNKEILKHDHMCFKNLELRIKRNRCFKLMREEYRELS