Scaffold Ga0209757_10019721

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10019721
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1863
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F010690	Metagenome / Metatranscriptome	300	Y
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100197212	F025299	AGG	MIIEEIPFFVEFVITGIVLGFGYGFTKLFLNHAKDKNKIRRSERKAKESHGLEDELDSYINNAPQIAQKIQAELTYLKENNATPEQMKSLESKLELLNKVQQYEPLIKIIGKPALKKIMTIIDRV
Ga0209757_100197213	F002100	AGTAGG	MSFRPALIKPTYNVGDYGHDVIIPLNCLSGSTVTLVPSTATFVQVLEDSRVPVDEVNQFITNSDEMAGVHPGDDTDFDTTWEWLPDMSFQAYKASFSIAVFMNVSAYTSGNFAISSVQLTMKVIGGGEGDQVIVNKIIDPGMSNMTSATSQIAILNVDTTTSEKIPDKPITIQVKVNTSSGSGTYQTGIVPLFCYFSAAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMIDTGIGL
Ga0209757_100197214	F010690	N/A	SVDLLPKRIIVPPIQSGKGTIANTVNPILEAYECNTGLQEGATSQFIISGQSQIAPTVATNLACALHYSTTPPNRPEHFYHKPDDETVFTAATTTSGNSFTINDGMWVEDLYVSVFTAVYTESQSLTGYGTFESNDFGNSLPLKVPMQPGAAGLGAVGTQGIMKLAAYHNTHMPMKTSCKIATSFTNDITQTGNTSFILGVGYTKQ