Scaffold Ga0209757_10008032

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10008032
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2757
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F000918	Metagenome / Metatranscriptome	834	Y
F036489	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_1000803210	F000918	N/A	MYRQYQTNSQAWDEVMSNIEESERRTEICKEMFGQENLRGLTNEQKDLFWQSI
Ga0209757_100080323	F000352	N/A	MRNVKLTESDCTFVHYVLRMYAQQTPGLDQEDKSEIREVAAKFK
Ga0209757_100080327	F036489	N/A	MKNNLRNVVFTTMIGLCTFQIGVIWKQNQVDQVNEWRESIVESYILRTDDGTMLGYNINILDDERLFTYED