Scaffold Ga0209757_10003036

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10003036
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4176
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F021554	Metagenome / Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100030363	F002100	GAGG	MSSFKPALIKPVYDVANFGHDNSLPLNCLSGSTATLTPSTATFVQVLEDSRVPIDEVDLFITDSDKMAMVHSGDDTDFDKSWEWRPDMSAQAYQISFNFAVGMKVSSYTSGNFKISDVQVICKQIGGGEGDFTYLDKIIDPGMSNMTATAEQVAIINFSTTVSAKVFDKPLTFQIKVNTDNATGTYQTGIIPLFCYFSSAVPKTWTTSSVLMHIHADLAHAFPIFRDQDNMNMLDTGGIG
Ga0209757_100030364	F021554	AGGTGG	MIIEEIPFFTEFVLLGIILGFGYGFTKLFLNHAKDKNKISRKEKKIEKDNNLENELDKYLDNAPAIIHHLESEIINLKEKGSTPEQTQRLESELNQARTLQKYEPLIRIAGKPLLKKIMSVLDRV
Ga0209757_100030365	F002150	AGG	LVAIPATILAKEIGKRGTKASGEFLEQKLGYNFIDLVTKLALFYVIAFMIAKYMEAIIYFQGGLSTIAGFFGIKMAQADQLPKQWVELFVDTNQQTFTSTPTSPGQFNPPGWDRPYDYGTPEHQEAEPYLFPEKEVKFKFWDLVNAIVIFYIGWEAYKYYRNGGRDFLTLAIFSLLGLMIGVLSFSKFLGKFSLNRFQEENK