Scaffold Ga0209757

Basic Information
Taxon OID	3300025873 Open in IMG/M
Scaffold ID	Ga0209757_10002477 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025873 Open in IMG/M

Scaffold ID

Ga0209757_10002477 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4569
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4569

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)	1000
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

1000

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F025299	Metagenome / Metatranscriptome	202	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100024776	F003270	N/A	MSRKRGRKRKAKKNGSKSIKSMIRQVVSKGSAPLAFWQQLSEKDYQVLNADSNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGIAGKIYGKVGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNNGGRVSTANVTPNVMVQNRSQTNRAFATAQRNRNFVPVDSFDYSTGSAFR
Ga0209757_100024777	F008596	GGAG	MSGAWDIATATSLGTGVAKTQINGGNNLTKPTQAVNLVEVVPYTVSSGVYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGAFINIVVPLLEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDNESTFTAATTNSGNDFTINDGMWLEDMFVSVFAGTPTVSQSFAGYGEFSSNDFGNSLPLKVPMQPGACGLAGTTTPGMLALASYRNTHMPMKTSCKISTSFTNDVAQTATSRFIMGVGYTKQG
Ga0209757_100024778	F002100	AGGAG	LSQIPRDSFRPALIKPTYNVGDYGHDVIIPLNCLSGSTVTLVPSTSTFVQVLEDGRVPVDEVNQFITDSDEMAGIHAGNDNDFDTTFEYLPDMSFQAYKASFSLAVFMNVSAYTSGNFAISSVQLVMKVVGGGEGDQTIINKTINPGMSNMASATSQVAILNIDTKTSAKIPDKPVTIQVKVNTSAGSGTYQCGIVPFFCYFGAAVPKTWTTSSVIVHAHADLAHAFPIFRDEDNMNMLDRSGIGL
Ga0209757_100024779	F025299	AGGAG	MIIEEIPYFVEFIVLGIVLGFGYGFTKLFLNHAKDKSKIKRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLAKKAQQYEMPIRMLGKPILKKVLSMVDKFGV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209757_10002477

Overview

Ecosystem & Geography

Associated Families

Sequences