Scaffold Ga0209311_1008559

Overview

Basic Information

• Taxon OID: 3300025871
• Scaffold ID: Ga0209311_1008559
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6149
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 40.12
  • Long. (^o): -87.63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077341	Metagenome / Metatranscriptome	117	N
F101222	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209311_100855912	F077341	GGAG	MAEMLWGFGGVKFVYGTTEMELPHCYGKLGFQELKNTWRTKSGNLKVQHKGFIPVITITMWNLGTWGASVFNMASLIQMLNAAKTEGIMIYPRYEYDNDLGYLCILSSDINPEDFSQNVAAGQTLELSFIGKQKIDNMPTYTTAEGFYYMVDFYDNYLIDHNGNNLILKG
Ga0209311_10085599	F101222	AGGA	MNVWVAIAINIVVYLVSFAYAWGKLNTKISEIEKRYYELDDKVTAITDCSVQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEIKDGKYTK