Scaffold Ga0209666_1112159

Overview

Basic Information

• Taxon OID: 3300025870
• Scaffold ID: Ga0209666_1112159
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1302
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008346	Metagenome	335	Y
F059861	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209666_11121593	F059861	N/A	MSKFYQEDLPYGEAGEKFVLSIINRKHPMAYKMEGYFIEYDIMIPEIEKTVEVKRDKHTDRTGNAFIETYCNKIESGINASTSDYWAYLTKTMLYWIKSNELKICISENNIPEGKNYKIDGKIIDAYLIPIDIFKNYCMRIDTLTEEQICQLK
Ga0209666_11121594	F008346	AGGAG	MPIKIKQSAKIRDRATGKTTTEHYYLKSMTLQELNDYIESSSAKKKVIQKCKNEIIRRDK