Scaffold Ga0209483_1011571

Overview

Basic Information

• Taxon OID: 3300025862
• Scaffold ID: Ga0209483_1011571
• Source Dataset Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4884
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000586	Metagenome / Metatranscriptome	1007	Y
F061081	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209483_10115712	F061081	GGAG	MSTVSAVLPDPRTSTPAQYLRPEAFSPESAGRARAPWLIAHGPSLGIPRLDHVSLRHSSFGSDAAAARFATTLIELGIGNPSDWSGCGQEPAKFLRRTLDRFVERQAEAAIDGAFELSVTLSTDPHEWCETEDEPDGSHMFLYMEAGSCGFVNLGPALALCEKEHPQLPVTFARMFLHGLGRCFRIYDDRDAGEHLSMLEDNYDPEEGREALPDRKKLLPPCMDQRPLRGAALRTILGRMAPRNRVLRLLNAALEVDRISRRVKLPVIPEPVREMFGDCNLPLPILLAIYQQGDAIEACFDDESQSMLELTPEPWPLISFDGTDSTSTDRAFRCLKGALDALVAARRVLDLVPGWEPIRREE
Ga0209483_10115715	F000586	N/A	MNHADPNTMRARARQATEILQAQLLETGTVEPLVALYFDEHIEQVQFEDPSVLDHFDIRTERSFDYLRTMVGLRTPQAAMITLDVQMGPFENDEREVVAEKTAIFLMLDSPLLTIQVIVPYTRSGGRIAVSRVYYTEMPGDENAAPCPLFKIFPGAPVAVC