Scaffold Ga0209119_1010645

Overview

Basic Information

• Taxon OID: 3300025860
• Scaffold ID: Ga0209119_1010645
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6214
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010198	Metagenome / Metatranscriptome	307	Y
F012508	Metagenome / Metatranscriptome	280	Y
F046975	Metagenome	150	N
F067629	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209119_10106451	F010198	AGGTGG	MGIKIANKDGFRYGESAYLIGHEFGLICVAYGNNEQEALDNAVDAGYVDSELMSDNDHAEYDANGWHDSFIYAGNASEPFWSEYLWIKPASERKEVA
Ga0209119_10106453	F067629	GAGG	MKNKGEVIRFKLELMAVMLVSGREDQAQELMQQALDLCDTITEQMPKEAE
Ga0209119_10106454	F046975	AGGAGG	MSKWDDWVEISTTRTALHNGDAPEFFQQAGIWIEELQAQLDNMVNSDNVFNEVKTQVLQDLIRSLDDDRAAALQLMVERGSDQ
Ga0209119_10106459	F012508	GAGG	MSKIKENLLGYEHEPSDWIEESAHVMVDELIEYQVYCMSLSELTSRVAKQMRDEYYGNSYTEMTQKYNEVFPNE