Scaffold Ga0209604

Basic Information
Taxon OID	3300025856 Open in IMG/M
Scaffold ID	Ga0209604_1011328 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209604_1011328 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5197
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

5197

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	33.8	Long. (^o)	-118.28	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA

Coordinates

Lat. (^o)

33.8

Long. (^o)

-118.28

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F023356	Metagenome / Metatranscriptome	210	Y
F048287	Metagenome / Metatranscriptome	148	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209604_10113283	F023356	GAGG	MNEIEKLVKESRAPKELAEAVKTGEKKSRAVSVRMEEPLFRAIEAQAELWNVKPAETIRTILRFYFLPVALEMQLRGESEKFWKGELTPEALREYMVFTLEATGKLSSSALFLKGEASRLSEALEGKLSEALKEEREGAEP
Ga0209604_10113284	F048287	GAGG	MIDTLKLMLSEYKVSPESSLRIQPASYEVATGEKVEYPLFRNEAGTFFGSKAYLNTENWNLTLKPLPAGNRGTGAFLQFSVPKNYYGSNYYSVGEEGTRAALKKVEGELEQSGVLTNLEEAELSRIDTFKNIEPEEPFSSYFSLFSLLRARRAQQRGYGTTFLVSNSSQEFCVYDKLQEMREHALETSELPETMRFEHRALKKEKVRSLYGFTRVGELFHGGYEVVKEKQVESWKNNLFSFSAGEVVVLGSKQLEQEMKVFQEKFGSNWFQYFLKSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELREKVCGTAERN
Ga0209604_10113288	F023356	GAGG	MNEIEKLVKESRAPKEFAEAMKTEEKKSRAVSLRIEEPLFRAIEAQAKVWNEKPAETIRTILRFYFLPAALEMQLRGESEKFWKGELTPEAAGEYMVFTLEAVEKLRSSAMFLSREASRLREAMEGKLSEALEEEREGSET
Ga0209604_10113289	F048287	AGGA	MYNNAVLLQTLQQVRFKVIDTLKLMLSDYEVSPESSVRVQPASYEVATGEKVEYPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGSRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVENELDQNGVFTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAHQRGYGTTFLVANSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRSLYGFTRVNELFHGGYEVVKEKQVENWKNSLFSFSAEEVVVLGSKQLEQEMKAFQEKFGSNWFQYFLKSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELREKVCELE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209604_1011328

Overview

Ecosystem & Geography

Associated Families

Sequences