Scaffold Ga0209604_1007311

Overview

Basic Information

• Taxon OID: 3300025856
• Scaffold ID: Ga0209604_1007311
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6801
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 33.8
  • Long. (^o): -118.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045729	Metagenome / Metatranscriptome	152	N
F088844	Metagenome / Metatranscriptome	109	N
F103316	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209604_10073111	F088844	N/A	MRSMTKFDDYFMKKGRIVSRETIGQNSEFIIYRVIEENWKIERASKFFNDFKKNVDFREAFLLCNVVIVRLNEKNLCPYCVEYFENLTQIYQHLKSWHC
Ga0209604_100731110	F088844	N/A	MDAEIDRKTGKKNLKNFKMRIMTKFDDYFTKKGRIVSRETIGQNSEFIIYRVIEENWKIERASKFFNDFNKNVDFREAFLLCNVVIVRLNEKNLCPYCCVYFENLTQIYKHLKSWHC
Ga0209604_10073116	F103316	N/A	MHRIIGLIAAFAVAFFTLPTLTPRPDHISVETKTQTQVTTQELQKSTDQSSNKTLSQADQMTDLKTLIADLDQQVKQANDLTEAINLFISGLLALLSYLIGNKLSAWLQKLFNKKRYKV
Ga0209604_10073119	F045729	N/A	MQVITNQELNSSLLKFLEGLDYYYPATKPLFQLLYNKGFRSIEVNDLQRFTIVNENQIRFKPAKNNNYRTFLISDFPSDFIAAIRNKSPKYISISCNTMRYTFNNLYKYHKVFSGNKEISLHLFRYNFCRKLYDSGASCEQIGARLGEIDLSNLDSYLFADIYRL