Scaffold Ga0209717_1063445

Overview

Basic Information

• Taxon OID: 3300025855
• Scaffold ID: Ga0209717_1063445
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1701
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.12
  • Long. (^o): -87.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065696	Metagenome / Metatranscriptome	127	Y
F068738	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209717_10634451	F068738	N/A	VYKQGDYISFYDTLLHTNLLKTDTFICFDSISIQKLSIKLIECGKDSELLANCYLQNNIYDNIIAVQDSVILLKDSVINSKDNIYNSKIKKIRRQRNTAVGVAFTELLLILGILVK
Ga0209717_10634453	F065696	GAG	MQLLIAYIKNVHKNYFNMKKVIYILLILSLISCSKQQPIKHLTVRVPSPFHYIDDLDTKLYIICSKYEALHLYKDLKGTLIQEIGINNYYSTMQRRMSIISYTNDIGTCQFQSATYEWLSAKYDINTNTIDPESSQIAVMVQAFADGKQNLWCGYKK