Scaffold Ga0209603_1034846

Overview

Basic Information

• Taxon OID: 3300025849
• Scaffold ID: Ga0209603_1034846
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2872
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005454	Metagenome / Metatranscriptome	400	Y
F023593	Metagenome / Metatranscriptome	209	N
F036489	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209603_103484610	F036489	N/A	MKNNLRNVVFTTMIGLCTFQIGVIWKQNQVNQVNEWRESIVESYILRTDDGTMLGYNINILDDERIFTYED
Ga0209603_103484612	F005454	N/A	MRIIKHFNPHFPERETYKCTIRYTTKFGTLDEITQWRDDQLKNEDYYKSLEESNTKAAGEFYKTLNYKGD
Ga0209603_10348464	F023593	N/A	MSKMNEIDEIAQYQADVILETLKEQVEWAIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDVDHYKQNTIISG