Scaffold Ga0209603_1025089

Overview

Basic Information

• Taxon OID: 3300025849
• Scaffold ID: Ga0209603_1025089
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3628
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030388	Metagenome / Metatranscriptome	185	Y
F078668	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209603_10250893	F078668	N/A	MSKIFTDSSTDDVWSGNVLTDSIAGQSIGILIPNTTLNFAQAEYEAGAMAWRLQNAQSLRVTARGWGVKAGQNCMSEAGIAPVRVAPNDILTVYPLPVDGTAQKSNVLAWITTTKGTELFKGLAVADNTATALVTAVNSQGLGDAFFNSTLQSLSVQCEDGCTLDSIQIIDEMGGVVFTAQGNVRGATTPAAKSNEYNLDLPRLAINIGKGWSFKVITVSE
Ga0209603_10250894	F030388	AGG	MATRNRKNGRFSKTTRRRRSKPKTNITNLAVSALVANSITQGMFKSNLIDFATGRRDGKYVAGADGSTRLTLPELLGVGSVNFGGNYGSGYDLQSVLMKNFKENWATMAVGVILIPVAAKTITKLIRKPVILPANRMLKSVGLDVKV