Scaffold Ga0209603_1001121

Overview

Basic Information

• Taxon OID: 3300025849
• Scaffold ID: Ga0209603_1001121
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28708
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (7.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026005	Metagenome / Metatranscriptome	199	Y
F058909	Metagenome / Metatranscriptome	134	Y
F059342	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209603_100112112	F059342	N/A	MGANKYLGYTDFNTWRVFHDTLSGIDFHSKVTADELKEISLFTVLCDFEMKQGSHLIEEYARLFIELADFEDIAESINYDIK
Ga0209603_100112123	F058909	N/A	MQLSNTETNVLLVALDHMEEHLLDLIKEITIKADTLGYRLEACRTTRTKINQL
Ga0209603_10011214	F026005	N/A	MTQKEKVNTIISEIEGFMFEFTPQNKSDKESMLSYFSSMLCALDADTAIEVMKELGDEGKHQALAIKINYGY