NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209748_1001225

Scaffold Ga0209748_1001225


Overview

Basic Information
Taxon OID3300025836 Open in IMG/M
Scaffold IDGa0209748_1001225 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-21A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12795
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow, Alaska, USA
CoordinatesLat. (o)71.270939Long. (o)-156.810374Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007838Metagenome / Metatranscriptome344Y
F014212Metagenome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0209748_10012252F007838N/AMRNVFTVLIISLSVQVFGQGATVVVKNPAWKLEDATREKIEMSDRLREYSKLTEQVTTEKENLQVIKDATEKLKKINRKVANYHNLELSIAQVSDSYTRVLGSLKTINDHNCFKPSEYHTISESMMGLLSQTSYAISTLTVVLTDNLSEMSDGDRLLNMNQALKELHENLGVINSAIIEVETLDNQRMQLRTLNYVNSIFK
Ga0209748_10012257F014212N/AMKNKLLIAFLFLSASASAQLIHVAGSKAIGLDGGYVKNGFNVSSRITLYKNNNFAYRGSIDYERVDFAISKASIIYVNPELIYNFYTLGENFFLSVKGGILSGVEFLSNSILDKKESQFFVGENIGLCAEYYVTNKIMFNLDLDQRFFQLSKVGKASSIIRLGINYNF

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