NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209832_1061814

Scaffold Ga0209832_1061814


Overview

Basic Information
Taxon OID3300025830 Open in IMG/M
Scaffold IDGa0209832_1061814 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1294
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017050Metagenome / Metatranscriptome243N
F018269Metagenome236N

Sequences

Protein IDFamilyRBSSequence
Ga0209832_10618141F017050AGGMSKLISGYWWAWKEIEAGKKSMQTLRKFYPDADLFINVDYEGDVDGYTKVGKELNATVTRNNFQLGYCGNFGNRDIGYDYWSKEKAVEWLRGVYSACTKTDSKYMMLFEEDDFVLKNISILDTDFSIAIHPTAPSPVRMRPNPIPKQFLDYSKEIGGIGDCPGYASGGGTIFNREHYMDSYERILDKFTDVYDEFCKINKIFGWEDFLFQYIFMLGGYEVIQNHDLCELWEVPDFHGFEILT
Ga0209832_10618142F018269N/APFRETGNEVQFYLYSYENEKQDKIVDDYTPCIKSQFVKPDYNKLGGGTKVSEGYKVMSVSYLNSLEQLKNQDLDLIISTRYDIKFLKNPFEEYNFDFDKMNFLWREPELKDLPIVNDTFLVFPYKMLDNVIDSIIEMEENPPQGKNIAMHNWYLPMVNQVGEDKVQWVDDEFRTAIQNELYILTRKA
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