NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208547_1025356

Scaffold Ga0208547_1025356


Overview

Basic Information
Taxon OID3300025828 Open in IMG/M
Scaffold IDGa0208547_1025356 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2324
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005704Metagenome / Metatranscriptome392Y
F010026Metagenome / Metatranscriptome309Y
F016805Metagenome / Metatranscriptome244N

Sequences

Protein IDFamilyRBSSequence
Ga0208547_10253563F016805N/AVDPFLTPLVTAAIVAGVSALWRIDKRASVMDTKMALILEQITALRSDHKERLDDHERRLRHLEGRG
Ga0208547_10253566F005704AGGMNRLSLAGGVLALLTTIVATTVTIDSRYAKSAEVRQQFCEARKQQLRDRIFELDLKERKTPNDKALREYLQQQLRDGC
Ga0208547_10253567F010026N/AMAVKSKTALGRVDHKAGKPKKTRQGQGQHSLPNHGRKKTRGQGR

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