Scaffold Ga0208547_1025356

Overview

Basic Information

• Taxon OID: 3300025828
• Scaffold ID: Ga0208547_1025356
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2324
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005704	Metagenome / Metatranscriptome	392	Y
F010026	Metagenome / Metatranscriptome	309	Y
F016805	Metagenome / Metatranscriptome	244	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208547_10253563	F016805	N/A	VDPFLTPLVTAAIVAGVSALWRIDKRASVMDTKMALILEQITALRSDHKERLDDHERRLRHLEGRG
Ga0208547_10253566	F005704	AGG	MNRLSLAGGVLALLTTIVATTVTIDSRYAKSAEVRQQFCEARKQQLRDRIFELDLKERKTPNDKALREYLQQQLRDGC
Ga0208547_10253567	F010026	N/A	MAVKSKTALGRVDHKAGKPKKTRQGQGQHSLPNHGRKKTRGQGR