Scaffold Ga0209714_1176694

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209714_1176694

Scaffold Ga0209714_1176694

Overview

Basic Information
Taxon OID	3300025822 Open in IMG/M
Scaffold ID	Ga0209714_1176694 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	525
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084343	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209714_11766942	F084343	GAG	MGSACILLITKDIDRNAIIKKAKNTIPKDLKLDFKFKICFVEIINPANIQNCVKNIIGIIKSGVTAKNLKRPGAXANPTPVKTLLNGILVSLSGNNFTPMTKINKAQINQVSIAVNPDIATAVFITVF

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