Scaffold Ga0209193_1009408

Overview

Basic Information

• Taxon OID: 3300025816
• Scaffold ID: Ga0209193_1009408
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3517
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028038	Metagenome / Metatranscriptome	193	Y
F029926	Metagenome / Metatranscriptome	187	Y
F085676	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209193_10094085	F029926	N/A	MRLDQVVKPNSKVMTKLAQDAIDKITLDASKGKFQNDRSGYSYKSDTYRKYKANSMRGKNGKLKAFANQSTDTQTSFVNMKLTGRTLRGMRGSGKTDTAIITYDRGEIVLGNQKRGYDIYDLSNKNKEFIAERFSKELLDRNIKKYVSKTTIIK
Ga0209193_10094086	F028038	N/A	VSKLANLDFYNKEIENIQQQLIDKLDNLVVGLGKVTDTELMQIAKQIDFFAEMETLGFTKLMNRVGKTFDDEIARVFAELSKRELGQVSAASIDALRELKNFEMTYLTNGVRQYSDQLKTAMLRGIITGESNIQIMNNINNTFGVGTYISSSETSFLINDAFSRFSNTSRAKAFEEFPEVKFQYIGTSDNKTREVCQRALQEPPLTREEIDALGYVDFANRGGYNCRHDWVRV
Ga0209193_10094087	F085676	N/A	QESGLSKKMSELDLMDALRSDTEQIYRPFEKNQFQIAKRICEVSGGINLGDQFSIDFAEREVPMSTDEEIKYYSWAFQNDLETRQSYLRKKNPDFKEEEIQAIVEQIDAEQPQEADETQSIIDRIGEQVG