Scaffold Ga0209199_1029290

Overview

Basic Information

• Taxon OID: 3300025809
• Scaffold ID: Ga0209199_1029290
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3150
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005012	Metagenome / Metatranscriptome	415	Y
F007392	Metagenome / Metatranscriptome	352	Y
F012576	Metagenome / Metatranscriptome	279	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209199_10292902	F012576	N/A	MNLLLAYIQFIFIGLVIYGSVLTFDNISINTSVSGIIAPILAWFAGTGLRASFNSENNIQKKGSIFMAVIVLAISYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLGTTKSISDLNTK
Ga0209199_10292903	F005012	GGA	MKSILILLLLFPSIGFADDFELLCKGEETKYLDGDLSSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYLLERSYVKSKDNILAARNFSTNALIEGQEIQTIKIDNVEINLLANDIFWTHEFNRVVKTNNEAKTIYAFRKSFKGACK
Ga0209199_10292904	F007392	GAG	LKILLLLSMFFCSLAFSQDFNLICEGERKVRYLSGKEFNVTNFESVLLKINNNAMEYIGVNSGRTYFFSNREYTAPKWPPHEDIKITEQYQFTPKTIKASQMIADTGDSEESSINLFSLDVNLLTGELNETEIIRNKKTNVKSMSNKFQALCKREDRSY