NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208258_1010889

Scaffold Ga0208258_1010889


Overview

Basic Information
Taxon OID3300025783 Open in IMG/M
Scaffold IDGa0208258_1010889 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1457
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015585Metagenome / Metatranscriptome253N
F016361Metagenome / Metatranscriptome247Y
F049579Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0208258_10108891F016361N/AMCKKRELTKEPLIDGVNRPIGERSIQILMSKQLALMALIDTMTITMDPEKGKNVFQEIVSIMKELKNMEARCTC
Ga0208258_10108892F015585N/AMTKIRLHLYSKRLCIKYQFEKIKMSQKNTESNQRLIKVINHCSRIAESKEVRELQLSPQLGELIKNLAGKGKEWSFILITYPKRNLEVQGKPPSEIKADPGLSEEEKFFSSPW
Ga0208258_10108893F049579N/ASSNSSEIIVLNESEEESVEVDFTCRNHNSDMEVGAIDFSPEQGSEPSTTESNQNKSMDNSTQTTIPIEAEKEEPLVNSLPGGIDYTKLTKCQLIDTVLGHRAELTEQFIFLINALAHGEYDDQYSIWKDEILDVVYQLIRIDTNWRLKVVTKDCGHIIIRHEECTCDEPFHYKTKIERRRVSRPRKRVLPTIPQLIEKRDSNVRDLLFMINESVVDYDYPRDNITWVMELRRIIQRILDIDPSWKLECIRVPAQCMKIKREQCNC
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