Scaffold Ga0208899_1033458

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1033458
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2376
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F023754	Metagenome / Metatranscriptome	209	Y
F023856	Metagenome / Metatranscriptome	208	Y
F026889	Metagenome / Metatranscriptome	196	N
F071124	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_103345810	F023754	AGGAG	VKQPENDHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFW
Ga0208899_10334582	F026889	GAGG	MNNVIQEYLALVERTVYYDDLDAFDAIEELEEQYPEIADLVYQQAGPLAYDFQNNEVLS
Ga0208899_10334585	F071124	AGGAGG	MTYEEYELGYYTGDSEDPSEPPEDPETHAMLEHLVEFETEMYRLKCRRRLKICTRRQLERLLIELHGEEWRDAL
Ga0208899_10334586	F023856	AGGAG	MRCRACNRILEETELTKKDTHGNFLDLCGNCLSASAFSGLDSDTMEYYQYEIFTEDEKYDTLY
Ga0208899_10334588	F002858	AGGAG	MAIDEKSIYLVDGGDYQVYCFGYTQARTVTNDIMKRDPWGGIPFVIRKDLELSFDDRGNVVMPRVVLDKILFLASDELPEGDE