Scaffold Ga0208899_1032219

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1032219
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2438
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062681	Metagenome	130	N
F087047	Metagenome	110	N
F093732	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10322193	F093732	AGGAG	MSKQGETIHKQLEEMLQDMPVQKRLERLLFKIEQYLAHSDEAQNLNHVNFITEIKYQLEDITNKEKS
Ga0208899_10322195	F062681	GGAG	MTEFKDAVEKQKGLQAYEDWAKQIRYVHSDGWEGTRTIVYNDGRRELYNLKNNQLINEEPRKTRRRDLIDSNAFVKFLHRIGFYHE
Ga0208899_10322196	F087047	AGG	MNKFKERYIFGFKSELHDETILWRYTDEAEHQANNHKTYKPKVSDLVILNKELPKQLKIDIRHELLNDILQGDSKLPQKRP