NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1009726

Scaffold Ga0208899_1009726


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1009726 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5438
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015083Metagenome257N
F026887Metagenome / Metatranscriptome196N
F054007Metagenome140N
F073490Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_10097264F054007GGAGGMVEKFKLLNDQEVAVSVRLLHRKPIREAVGVDIVAAAHDPDQLKQLLDLLTDPDKLWAVVSVVSGVSVDDLLAQADGSTEEDAGTALLESVVSFFPKSSPLRTPLLRLLERAKETHGEQVRNAEQLALEAVESLDIGSVISDANQQTNG
Ga0208899_10097267F073490GGAMIQVDFDTTIGDFQRGFFDRVSDKVIAPKLRRFLSRAGGSIRKAAGRQFQSRAQKPLRELTPRQLRRFRQEQAEYKAGKRQEKPRKPDKVALPGQSPRVHTQRKSESLLAGRIFYALADDEQSVVIGPDKLNSKSSRITLEKLEQRFPFMEPAFEAIQPRLPSYWPR
Ga0208899_10097268F015083GAGGMASRSATLANALVTAISGWASLPSGVTVARVRSVTHLLVDMPTAAVGRVAVIVSSVEDQSSRGDVAEDVTIGIAVIGNCDSEAVAQSDSWDEFTEELRDWLRTDSQFKSIDLGSGLAAQRRSVSTVTVADADMLDENEIFVSATEAVWFMSVGNHA
Ga0208899_10097269F026887GAGMPSPIATAAAAAREASRRVRGETVTYTRGAYSVTLLAVRGSTAWDRTAPFNGVRVGDRSTDWLIKQADLVDSGAAEIQPQRGDEISVDGVTFRVMPYGPDSQLWMYHDRDRKYLRVHTKERV
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Institute for Fundamental Biomedical Research
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