Scaffold Ga0208899

Basic Information
Taxon OID	3300025759 Open in IMG/M
Scaffold ID	Ga0208899_1000094 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208899_1000094 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52368
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (42.42%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

52368

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (42.42%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F050411	Metagenome / Metatranscriptome	145	N
F070016	Metagenome / Metatranscriptome	123	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_100009436	F050411	GAG	MACENVYDAFKVASEHLGPELYRRATFDSIWSNLIPRGEFPKHVGLTKSVFELGNAYPTTDERSWDAYTNATGSNAGACAYNFTDYTVGFDELTYSPTHFQLRGPVLCKDELNFSHLAPEFLNGYVEELTKLTKAELDNKLCKEYYDLTPKAVMTASFPITAAGAPLTALPEATSDLTQEALDKTYVHLIHKRASNPDSSGFVSLDNGGPLFSLYLGMEASQSIILNNSEFRKDLREGQMNDELFRRLGANTAIKGFRHLINPLPPRFTFSGGTYTRVNTFADVSGTKGTYQDINPAYLDESSAPYEAAFILSPHVMNWDWVRPDNQVGNTRWEPMSYMGDWKFVTGDEACANDGTGYDPFHKYGRHIAELSGAAKPAANREAGLMILFKRCHLSSLTTVTCT
Ga0208899_100009448	F070016	N/A	MRLNLAAVKASRVTDMLGLCEDDPRLLDFLNEGHRRLIHAGLYWNTFQTYQICVGSEGCLTWPRQVASIEALSVNDAPVTLRNGWFEYLQSGYGIRTNENSSELQLIDRGTACTFDDITDNSTVLEVYSLVAEDAGSQLLVQGYDENGNWIRSLVGSTYVDGEYIDISTTKTRSTNIFTAVTSITKPVTNGPVYLSKVDASSVVTLIGYYEADETLPNYRRSLIPGLADAPNYVCGDGDPLTDRRAVRAVVKLEHIDVVNDNDFFVIGNVSAIKNSAKAVQLEEQQNLQESIQHFQLALQLLDNELKHYEGTSNVEPLKIESDTWGAGQMPTVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208899_1000094

Overview

Ecosystem & Geography

Associated Families

Sequences