Scaffold Ga0208459_1008214

Overview

Basic Information

• Taxon OID: 3300025748
• Scaffold ID: Ga0208459_1008214
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6825
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 39.88
  • Long. (^o): -75.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037746	Metagenome / Metatranscriptome	167	N
F053881	Metagenome / Metatranscriptome	140	N
F074119	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208459_10082141	F074119	GAGG	MSEVQVFEVLAKILPYLISLGIGTFAGWELVKRKIHELAEFFKTVDEALYDDAVTEKEFRAIWESGRALFGTGLKKGAV
Ga0208459_10082143	F037746	GGAGG	MASVDIDDAVANDTVGQEFEANYISGTTDKELEEARKLMSRLLNKYGSRAALEANGEDWARYKKAMYVVYSRSKDLMQTAERARKELIKRKNLLSKFFEENPEILFGLSEWQRINIRKYTDYGLLFDQELLWDLIRELGKEGTIAHLANIANYIYNDTGFLGGVREDYDSLKRGPVRSIYHRPVCKSSKTIRPSCSGGCGCTSED
Ga0208459_10082146	F053881	N/A	MPGIPSISKGSFGEKERRIYSKLYNHLLESFEIDEIAADQIATSLIIQKCVLIPRLLTGEDIDINQIGESIRKWLSEYRLTPKSKEKESEVTINLSAIIEEIHRERDNQS