Basic Information | |
---|---|
Taxon OID | 3300025732 Open in IMG/M |
Scaffold ID | Ga0208784_1002403 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7436 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (25.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005089 | Metagenome / Metatranscriptome | 412 | Y |
F021974 | Metagenome / Metatranscriptome | 216 | Y |
F029725 | Metagenome / Metatranscriptome | 187 | Y |
F041726 | Metagenome / Metatranscriptome | 159 | Y |
F080645 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208784_100240312 | F029725 | N/A | VISLPNPMSFTENKLTELAWFLKEKCRKDPDLLDTIISEYVWNLSESKLDELEDFLVNNFGDD |
Ga0208784_100240317 | F021974 | N/A | MNTNIVSEIYSYHTDWKNGFVNQMWIEQSGDEYKGYSYVAVAHNPRNGSTMEMSNPRTSYSETLNWVRGFCGTFCILN |
Ga0208784_100240322 | F041726 | N/A | MNTYRLLIEYWVPDEDENLYEERIVKSRSSCGKIADDFLAQDRTNLIRSVEVTPV |
Ga0208784_10024037 | F080645 | N/A | MTLTSEQVSDLLTAHCNRVIDNMDMDDLVSYAVQMMMSSFDQNPGQGDTDVAMLIEDIWVAEGEDDDSTQEFIAGIVGDELAEEIVTTTQF |
Ga0208784_10024038 | F005089 | GAG | MEHYNQLNGVVDYRLPGVCNHYFAKYDWNGERDGEITLTTKVSKTVKGQFRYTFQVNGKRIAEKQIASKFLSLGAFR |
⦗Top⦘ |