NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208784_1002403

Scaffold Ga0208784_1002403


Overview

Basic Information
Taxon OID3300025732 Open in IMG/M
Scaffold IDGa0208784_1002403 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7436
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005089Metagenome / Metatranscriptome412Y
F021974Metagenome / Metatranscriptome216Y
F029725Metagenome / Metatranscriptome187Y
F041726Metagenome / Metatranscriptome159Y
F080645Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0208784_100240312F029725N/AVISLPNPMSFTENKLTELAWFLKEKCRKDPDLLDTIISEYVWNLSESKLDELEDFLVNNFGDD
Ga0208784_100240317F021974N/AMNTNIVSEIYSYHTDWKNGFVNQMWIEQSGDEYKGYSYVAVAHNPRNGSTMEMSNPRTSYSETLNWVRGFCGTFCILN
Ga0208784_100240322F041726N/AMNTYRLLIEYWVPDEDENLYEERIVKSRSSCGKIADDFLAQDRTNLIRSVEVTPV
Ga0208784_10024037F080645N/AMTLTSEQVSDLLTAHCNRVIDNMDMDDLVSYAVQMMMSSFDQNPGQGDTDVAMLIEDIWVAEGEDDDSTQEFIAGIVGDELAEEIVTTTQF
Ga0208784_10024038F005089GAGMEHYNQLNGVVDYRLPGVCNHYFAKYDWNGERDGEITLTTKVSKTVKGQFRYTFQVNGKRIAEKQIASKFLSLGAFR

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