NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208784_1001098

Scaffold Ga0208784_1001098


Overview

Basic Information
Taxon OID3300025732 Open in IMG/M
Scaffold IDGa0208784_1001098 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11683
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005092Metagenome / Metatranscriptome412Y
F058095Metagenome / Metatranscriptome135Y
F081257Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0208784_100109812F005092AGGAMDKLEYALRTIANCDLCYGQGYNGWAIGEDYDMEDCICNPYGLILENGEVIFDNGLLSEPELFTTQEAY
Ga0208784_100109814F058095GAGGMEYNYVLTTYYDGELFSTHRISDFMEAHEAWAKCVDYGNATMFATYNLTDPTGKMYTKNFYSDGRVEIR
Ga0208784_10010984F081257AGGAMKTLSYTAEKDGTLVEVVNRLMVSEYQINDLLDSLVRWGYTIETVRVDEGDDSQHWQG

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