Basic Information | |
---|---|
Taxon OID | 3300025732 Open in IMG/M |
Scaffold ID | Ga0208784_1000288 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 25643 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (30.95%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005089 | Metagenome / Metatranscriptome | 412 | Y |
F026746 | Metagenome / Metatranscriptome | 197 | Y |
F029725 | Metagenome / Metatranscriptome | 187 | Y |
F049578 | Metagenome / Metatranscriptome | 146 | Y |
F057764 | Metagenome / Metatranscriptome | 136 | Y |
F101032 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208784_100028810 | F057764 | N/A | MRRSKTPYWNFWKVVFAGWLIRYPEKILKIFGVPLGILIVMIYNAMTK |
Ga0208784_100028814 | F026746 | N/A | MSKSVILSLLSKGSTGNEILSILDVIVADIEQENIDSCAEVFAN |
Ga0208784_100028816 | F049578 | N/A | MRPLKYKNLGYGVMIRVPESVTAILPQLQDVMQQLEENGEDSREVILQMLSDIEERLSN |
Ga0208784_100028820 | F005089 | GAGG | MENYQQRNGVVDYRLDGICNHYFPLYVDGNPSYKNGEVCLTCKVSKTVKGQFRYTFQVNGKRIAEKRIPSEFLSLGAFR |
Ga0208784_100028826 | F029725 | N/A | VISLPNPMAQTKNKLVELEEFLYESCRQDPDLLATIISEYILSLNSSQLTELEDFLVNNFADE |
Ga0208784_100028834 | F101032 | N/A | MSNFLCITFGPSDDVARNGWFNRKQRFDDVNDAKQCGRRQLSQPGTFGYVVIEEGEDWWEVVDELGAPANAVSITCNRLGTFKVEPASELSLV |
⦗Top⦘ |