Scaffold Ga0208784_1000018

Overview

Basic Information

• Taxon OID: 3300025732
• Scaffold ID: Ga0208784_1000018
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77926
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (48.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F037196	Metagenome / Metatranscriptome	168	Y
F057764	Metagenome / Metatranscriptome	136	Y
F095417	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208784_1000018102	F095417	GGAG	MFKFIKWFISPSKRPIVCEDVDVYEKLIELQKRIEKLEEENVETTNCIYELGNSVNAVDARIDIILNTPNITEF
Ga0208784_100001835	F057764	GGA	MRKKSRPYWNFWKVVFAGWMIRYPGKMFRIIGVPLGILIVVIYNAVK
Ga0208784_100001849	F037196	N/A	MTMTSQTITLEQFHDLLSDAYAVSVNDTLYFVGYDTDDNPYISDNDGQDYVDLSTVDGDIEVHKNYVFFHVNGEPLQMVFLNIKPLNF
Ga0208784_100001850	F005089	N/A	MNTNDLLDSIKLSEQLALENYQQRNGVVDYRLDGVCNHYFAKYDWNGKRDGEICLTCKVSKTVKGSLRYTFQIDGKRIAYKEIWTKFNSLGAFRI