Scaffold Ga0208196_1070465

Overview

Basic Information

• Taxon OID: 3300025724
• Scaffold ID: Ga0208196_1070465
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA7_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1311
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 37.43
  • Long. (^o): 138.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061870	Metagenome / Metatranscriptome	131	N
F074914	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208196_10704652	F061870	N/A	MKRRIQKLETLTAWKALPDASEYIQVWAIDPDQEEAEKWFETRDGARVTDPKTIERLTAYYAEALRRGTVNVTARFEDYDDPEDSTGAGA
Ga0208196_10704653	F074914	AGGGGG	MKISTLLRKANAALCRIESLNPEEIDREVFKMEIEKARAIAYLVRTVSEIIAKNEMEDRIAALENALTQER