NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208197_1039183

Scaffold Ga0208197_1039183


Overview

Basic Information
Taxon OID3300025720 Open in IMG/M
Scaffold IDGa0208197_1039183 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2034
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)37.43Long. (o)138.83Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049736Metagenome / Metatranscriptome146Y
F052016Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0208197_10391832F049736GAGGMEPRWRAWLKNAKVAYWLIVWGLVFFAVVIALGMAEILSTRQILLIGQVYVVLLLFGMVLQMIARRL
Ga0208197_10391833F052016AGGAGMSDRVNVIFSGTNRNFLYNCEIPTSVLPRNGDRICLSIPGHSNIHCYVEDMEWQYAELNQRIDTSIVAKVKILQED

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