NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208197_1029845

Scaffold Ga0208197_1029845


Overview

Basic Information
Taxon OID3300025720 Open in IMG/M
Scaffold IDGa0208197_1029845 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2452
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)37.43Long. (o)138.83Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022683Metagenome / Metatranscriptome213N
F041288Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0208197_10298452F022683GGAGGMASEMADQMKPLTDFFAKWTKDSLEMMTKGMAMYNRMSRAWMEVGEGASSEKPDDVLKKWTEAFGGSYNDLFEMYTQPFKMFGMGGQAPSKEVWENAFAQWQRMFTAMPSGSAPAAGDEFVNFSKSWFEGYSKVCQAWVDSMQRMGEACKSAVAEGDKPESAMGNLSEISERFVKEWTSFVTEQAQAFFSLWRSRLPAEKKDPKKPKKE
Ga0208197_10298453F041288AGGAGMMLSHLADNRFAVILTVTAGVLLLSGWAVSAALLPSKQLPTDPTLKGSLGNEKLNTLRFETYGGLPENRLIGYFLYKDGIRVTADAPHVESIGKLSLNEVFADQARVAKAKFYHPGRLMIREITRGADVVGYAVHDPRMEVTLWDVTADVSNVSLELRYKDLQAKGERYDAGPR

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