Scaffold Ga0208197_1029845

Overview

Basic Information

• Taxon OID: 3300025720
• Scaffold ID: Ga0208197_1029845
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2452
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 37.43
  • Long. (^o): 138.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022683	Metagenome / Metatranscriptome	213	N
F041288	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208197_10298452	F022683	GGAGG	MASEMADQMKPLTDFFAKWTKDSLEMMTKGMAMYNRMSRAWMEVGEGASSEKPDDVLKKWTEAFGGSYNDLFEMYTQPFKMFGMGGQAPSKEVWENAFAQWQRMFTAMPSGSAPAAGDEFVNFSKSWFEGYSKVCQAWVDSMQRMGEACKSAVAEGDKPESAMGNLSEISERFVKEWTSFVTEQAQAFFSLWRSRLPAEKKDPKKPKKE
Ga0208197_10298453	F041288	AGGAG	MMLSHLADNRFAVILTVTAGVLLLSGWAVSAALLPSKQLPTDPTLKGSLGNEKLNTLRFETYGGLPENRLIGYFLYKDGIRVTADAPHVESIGKLSLNEVFADQARVAKAKFYHPGRLMIREITRGADVVGYAVHDPRMEVTLWDVTADVSNVSLELRYKDLQAKGERYDAGPR