Scaffold Ga0209201_1007225

Overview

Basic Information

• Taxon OID: 3300025708
• Scaffold ID: Ga0209201_1007225
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7615
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F045645	Metagenome	152	N
F046997	Metagenome	150	N
F055381	Metagenome	138	N
F058854	Metagenome	134	N
F063278	Metagenome	129	N
F063304	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209201_10072251	F045645	AGG	MGQDLHECGTEDLDMKLQETMLTVLKSVAGVYAVRPIIRGKALALRQGRDGHELAQDEGQAVRVVAVSDAKPSLLSFAAINGIPVKNYTDMAVPKPKAPSAQKPAEVPELVM
Ga0209201_10072252	F063278	N/A	MKERYLVIGFQPPTRRISLDSEWAESATDAMRAVAGMRKAADVLLAWTPGQMRLMADLLAAMTPQQIAFNRRTAELEERAFRASQTAPPQVRTAGPQRQPFLVISYDPVTEAVHLDTELNDSSDASLRSVAYIRGRAHVILAFTPEQLREMVDNLEGLTAEQMARNRRAAEQEEKTFYAELAARQ
Ga0209201_10072253	F063304	N/A	MRLNNSTPDGAVSPHIYNLLDQRLAQQGAPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETALAEEHLRLMDDINKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDESKLICLSDVKPGNAYSAFAQRTALIGIQPHEWVKRWVESQRDLFRNKPSDAGYLRLAQRLSGAWPLEPGKGDAFQRALASFLDGIAASTSQSHAVVVQSSLLETFARAIRHQARDLSLDRPAAPSPAMSMS
Ga0209201_10072254	F035367	GGA	MELIMPAAAKWMFILVLNAVLCGFFGLGIAVMHFLWLEYATVRWPKVRYTDDYQTSFALACAAVVFVLTTLRQIKTRLESKSLRPGEIGFILIFAAIVMVGLTPVPGSNFPQYLYEMNYPGKQDTSKQEPKSEEEAKPLKLKRDYP
Ga0209201_10072256	F046997	AGGA	VFTTFAYRTLSLIGCSLALGAAASPVTVGDVRTERDSIPRALARDKAEAIAIFRASQQPLLWLRAMSGISCIENKLQSTPTNAAAETSALLLTLGDKKLTLHADVLKKSYTACQPTNGLPLYVDRNRRRAPETYVDPEILKGGVNILTLKGTNQVPACLSGEALENYLQLRCDQKLQPGDYWRELHARKLDDEQLARLRYYDYLDTHVALRSVPVYQCMEIRSRNH
Ga0209201_10072257	F058854	GGA	MWLCVLCLFTSAWKSEAEIIDHLNARWQGCAWQANRLELSGLTYQGALFPLITQGPGAFSLPSGAFVLRLHVLPLNARDNEPILVLWGRIADPRDKPLAKLFLRKGRLVWVCPIDAKADSLFDAPKEVELETRELTPGLWATVDVFINPLPYQQTFGWNLEMNHPQDPAKPSGRPLHLARQLTSADWTLQKIEMPRLHAAWLGQMELLPADTPPAQLRPNILRQ
Ga0209201_10072258	F055381	N/A	MKLFLKLLFILPALAATGSSIREVYLPPWYENASFQTFELDIRDLPVHCVQLDHPCTLFCTNQVIMVSNGMARARLLIDLKKTPATFPIIVMAPDANGRMTPRQKLICHLSLVPLPIQVEVRGDTFTVTNLTEEPFELERAEAVNITSQDDRHIAGTLNGSGRLKLKGRAEIRLNPKPGSGGPG