NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209201_1003297

Scaffold Ga0209201_1003297


Overview

Basic Information
Taxon OID3300025708 Open in IMG/M
Scaffold IDGa0209201_1003297 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14320
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070167Metagenome / Metatranscriptome123N
F077342Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209201_10032972F077342GGAGMARTLNEFIVSTGNYVYEITDAEMAGVDLTDFNVAVLLHCVLSDESEKDFIVFSKGSIDQVFDISTQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESKNSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPVKSMQMQGQLREILNPKRI
Ga0209201_10032975F070167AGGAMSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAARNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNKSGFFGGLFGNLVGASPALLFGTQSPAGLLKLLGL

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