Scaffold Ga0209507_1005940

Overview

Basic Information

• Taxon OID: 3300025706
• Scaffold ID: Ga0209507_1005940
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6527
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 40.3
  • Long. (^o): -88.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080092	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209507_10059404	F080092	N/A	MKYIIIAVLAVFFCLILCSFPSSAVISSSAYSNGGSIILNSEECYETSNDLMRFGTSNDSYLYNGKSQTIVSLGRTGVQKTDTTRVETLGMLNAFDTVGMFATQTNSPETPCDENNFLINGTDSSRYPETQTAEGMWGLMGSGPGTTYESEIVTNGKTVGASVQGTTPQGYLYEDAYGALYAGLNKSETILQYSYYRHDHGLLSSDENKSLDAGYDWLWDTSAEEIVNDTPANETGNETVEGANS