Scaffold Ga0209532_1010856

Overview

Basic Information

• Taxon OID: 3300025696
• Scaffold ID: Ga0209532_1010856
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4853
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F087067	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209532_101085610	F087067	N/A	VVGNGIGWMIIVLNQIQKGMCKIIIILYILLCNVTYGQECSPFYKPKSYTLDKNKSAAIGYVACLHARGVVAEVGYDKLFLGILAMGQGHHGATYTFLQYEVPFDRFRVYIGPAYKLNHDPRLIIGRVGLDLKLYKKFYATGSILQINQNLNYLHVGFKVLI
Ga0209532_10108567	F004866	GAG	MAIVTNVDLKLKVDINDSIKYQILTYCFFNKTLISNTDLEFLTELSKNPKIEISKFCGILTEKLIFKSPQSARNAISKAEKKNLLVKSGTNKKTISIKKEINVQVKGLVLLNYKVLGNESKEA
Ga0209532_10108569	F005243	N/A	MSKSTKNLTEENDPTLSKEEMAARREEITAFYKDNIPHLEVQAEYEVLLATIEKSRAERMQAQMFMAQQYSDQKEGVDVNSEEAKAFKQAMEEAASKID