Scaffold Ga0209653_1000366

Overview

Basic Information

• Taxon OID: 3300025695
• Scaffold ID: Ga0209653_1000366
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40471
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (7.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016325	Metagenome / Metatranscriptome	248	Y
F020365	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209653_10003662	F016325	N/A	MKISINKVNQTNFINFVNRLKVIDTFIYFKIKDGVVQASAYLPQRDAVKHHRLPLGEVFQIEEGNITTDKELKIAFFDATRLTEAFKQFDNGSIQAEVEFLENDEDCVATEFKIFNDELEIKLACSEPSLGYKDLTDSQIQGIFNIDSPDYVFDMDFSTTSKVRNLFGLDKEETFSISANGDGVRMKGKTYNMLVTPDYEGGRPGIVTLFKKYLNLLDREDYSANVMGNRVVLRSKDSETLLTIATCQTAE
Ga0209653_100036628	F020365	N/A	MKFFENFGKREGLVYIVVSLWVIMGVLGAYKGASLSDLAVYFGSLTAYAATYIWGESKRPSLKTRIFKKGPNSRREVMIYVIVALWAIAGVAAIWFMSSLNELSIYFVSLTGFIMSWIAGEVYKPQDEVNKNKKE