Scaffold Ga0209744_1090588

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209744_1090588

Scaffold Ga0209744_1090588

Overview

Basic Information
Taxon OID	3300025692 Open in IMG/M
Scaffold ID	Ga0209744_1090588 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-311 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1066
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.28381	Long. (^o)	-156.5985	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012538	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209744_10905883	F012538	AGG	MSATVDQPDRQRTVVAAKGPNPAVLSLNRGLQAVLASEEGAVIGRAVAQIVRGDGWQEAKSSAVMVEAVIGWLGRDVVTPIGFYSNGTGPVEALAKVGNYYITGRGIDHEDDLIIHCCERHRGARFSQSRTEELDLSAPNSRFTMGTPLAQRAADRLAVLLAEELDPEIARVVLGS

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