Scaffold Ga0209407_1037102

Overview

Basic Information

• Taxon OID: 3300025689
• Scaffold ID: Ga0209407_1037102
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG3_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2135
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.72
  • Long. (^o): 135.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014002	Metagenome / Metatranscriptome	266	Y
F030054	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209407_10371022	F030054	N/A	MSNREKWFLLIICVLLLIIMFSGEGFRKKNKIINTNKELISSYKERINSSNLAIDSLQKAIEQAKKVDTIIKYRYKQKIDSIYVYKQGDYISFYDTLLHTNIQKSDTFICFDSISVQKLTIKLVNCSLDSELLANCYLQNNIYSNIITVQDSVILLKDSVIKSNDNIYNSKIKKLRKQRNTFAGVSFVEFLVILGLISK
Ga0209407_10371025	F014002	N/A	MEFNFNISELVSIIALLVAIIGGYVNTKIQITKLVEENKNLSEKVDNLDKKITEICKKVDKIKIILAKEGLNGDNE