Scaffold Ga0208019_1004149

Overview

Basic Information

• Taxon OID: 3300025687
• Scaffold ID: Ga0208019_1004149
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6879
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047028	Metagenome	150	N
F080002	Metagenome	115	N
F085646	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208019_10041496	F047028	GGA	MSNLSRGAAALVKNLFGGNETERMISAGVVRTILSDMTRLYFENRTAIGEGILVFNPESPENSKYLSKKDLENDLAVAQEGMDEKAEALFSKLIQVVEKESESDLALVAMVQSNEICVHLIDPVEANKKIDELSNSLIL
Ga0208019_10041497	F085646	N/A	MDITREIKDIRNALNSIETSLQLLVAQKEGRITSAFVSKKTVSQRLNIPAVTIDKLIHQGIVSQGESGLVEGKHYCRVDPTERNSSKFLFDIHAITQAAWNNFTYV
Ga0208019_10041498	F080002	GGA	MNDLKRPCLWPNEYKINNLPTWIYADNQPPQDLTDCEAKISSIEYTIRDIDLQIEIRELELKTGNSRHGSAFDYEKWKVGALKAKQTHYYLLNAYKYWLIKNKRGSLDDSERLDKLLRLLIDDPTDFEQKVEALLK