Basic Information | |
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Taxon OID | 3300025680 Open in IMG/M |
Scaffold ID | Ga0209306_1000224 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31718 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (13.04%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009787 | Metagenome | 313 | Y |
F018540 | Metagenome | 234 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209306_100022434 | F009787 | N/A | MKVIYLICVLTLFSCSAKYHYNKALKRGLQVTQTSDTIRISTIDSIPVIKHDTIVYEHFYSSKDTIIEYKTVYVPQTRLETRIEYKLKRDTLRMITRVEVQRAKAEAKANKKPNYWWMLIFALVFGAVMFVLNKLISKII |
Ga0209306_100022439 | F018540 | N/A | MEQLKIDWWSNFNEELYCNYLIAKDEKMNTYKILYKYYKGANTDAECCQAVKYVKAEDRQEAIKLCGLWKKLIISIEKV |
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